README.md

In goushixue/QRseq: Quickly RNA-seq Analysis Platform

Overview

We designed an interactive RNA-seq analysis toolkit based on R Shiny package, named QRAP (Quick RNA-seq Analysis Platform), which can easily accomplish RNA-seq data analysis and visualization through an intuitive graphical interface on the web page. As a comprehensive RNA-seq analysis tool, QRAP can support to analyze publicly available and user-generated data, which include regular RNA-seq data, time-course RNA-seq, data and clinically relevant RNA-seq data, and provide function annotation for approximately 500 species.

1.QRAP workflow 2.QRAP Features

Usage

Depends

• R (>= 3.5.2)
• STRINGdb (>= 2.3.0)
• DOSE (>= 3.16.0)
• enrichplot (>= 1.10.0)
• fgsea (>= 1.16.0)
• clusterProfiler (>= 3.18.0)

  Unpredictable errors may occur if these packages are lower than the specified version

Installation

Install the QRAP from github:

## install.packages("devtools") ## you may need install devtools first
devtools::install_github("gsx-ucas/QRAP")

Launch QRAP in R or Rstudio Console

library(QRAP)
startQRAP()

Documentation

The documentation is available at here , the doc include a tutorial and example gallery.

goushixue/QRseq documentation built on July 9, 2023, 9:28 a.m.