barplotResults | Barplot of enriched results |
degPlotCluster | plot the results of DE gene expression pattern |
dotplotResults | Dotplot of enriched results |
download.GEO | Download GEO Datasets or supplementary files |
fortify_results | convert enrichResult or compareClusterResult to a data.frame... |
get.DEGs | Get A List Of Differentially Expressed Genes |
get_supported_species | Get support species names |
ggnet3 | generate gene network graph of GENIE3 (modified from... |
ggtableResults | ggTable of enriched results |
load.DEGs | Loadding DEGs from local directory |
load.REGs | Loadding REGs from local directory |
mainServer | create the mainly server functions |
mainUI | Build shiny UI page |
plotCorScatter | scatter plot of two samples or two group samples with... |
preview.GEO | Read in and preprocessing download files |
publish_gostdot | gprofiler2.dotplot of enriched results |
publish_gostplot2 | Plotting enriched results of gprofiler2, this function was... |
publish_gosttable2 | Plotting enriched results of gprofiler2, this function was... |
read_files | Function to import files by automatically identify delimiters |
remove.Batch | Remove batch effects from data |
ridgeplot2 | ridgeplot for gsea enriched results (modified from... |
Run.DESeq2 | Prepare and Run DESeq |
set_anno_color | Auto set the annotation colors for pheatmap |
startQRAP | Start the QRAP shiny App |
subset_Tab | Subset The Experiment design Table and keep the order |
transform_value | Transform normalized expression matrix by vst or rlog |
upload.data | Load in data sets and creat dataframe of Reads Number |
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