preview.GEO: Read in and preprocessing download files

In goushixue/QRseq: Quickly RNA-seq Analysis Platform

Read in and preprocessing download files

Description

Read in and preprocessing download files

Usage

preview.GEO(
  fetched_res,
  geoID,
  geo_files,
  genes_column,
  reads_column,
  header,
  row_names
)

Arguments

fetched_res	object of geo.Download
geoID	GEO Accession Number
geo_files	a vector of input file names
genes_column	the column number will used as gene names
reads_column	the column number will used as reads counts of samples
header	whethere use first row as header
row_names	whethere use first column as rownames

Value

data.frame

goushixue/QRseq documentation built on July 9, 2023, 9:28 a.m.