plotCorScatter: scatter plot of two samples or two group samples with...

In goushixue/QRseq: Quickly RNA-seq Analysis Platform

scatter plot of two samples or two group samples with correlation

Description

scatter plot of two samples or two group samples with correlation

Usage

plotCorScatter(
  object,
  corr_group1,
  corr_group2,
  corr_method,
  design,
  digits = 4,
  pt.size,
  pt.alpha,
  pt.col
)

Arguments

object	DESeqDataSet or DESeqTransform, if use DESeqDataSet log2(normalized.counts + 1) values will be used, if use DESeqTransform rlog or vst transformed values will be used
corr_group1	group1, can be a single sample name or a condition name of a group samples
corr_group2	group2, can be a single sample name or a condition name of a group samples
corr_method	a character string indicating which correlation coefficient is to be used for the test. One of "pearson", "kendall", or "spearman", can be abbreviated.
design	design formula when runing DESeq
digits	integer indicating the number of decimal places (round) or significant digits (signif) to be used. Negative values are allowed (see ‘Details’).
pt.size	point size in plot
pt.alpha	point alpha
pt.col	point color

goushixue/QRseq documentation built on July 9, 2023, 9:28 a.m.