publish_gosttable2: Plotting enriched results of gprofiler2, this function was...

In goushixue/QRseq: Quickly RNA-seq Analysis Platform

Plotting enriched results of gprofiler2, this function was modified from grofiler2's publish_gosttable function

Description

Plotting enriched results of gprofiler2, this function was modified from grofiler2's publish_gosttable function

Usage

publish_gosttable2(
  gostres,
  highlight_terms = NULL,
  use_colors = TRUE,
  show_link = TRUE,
  show_columns = c("source", "term_name", "term_size", "intersection_size"),
  filename = NULL,
  ggplot = TRUE,
  fontsize = 15
)

Arguments

gostres	enriched results of gprofiler2
highlight_terms	terms to highlight
use_colors	whether use color to highlight p-values
show_link	show the link of gProfiler websit in the bottom
show_columns	names of additional columns to show
filename	file name to create on disk and save the annotated plot. Filename extension should be from c("png", "pdf", "jpeg", "tiff", "bmp")
ggplot	whether use ggplot
fontsize	fontsize

goushixue/QRseq documentation built on July 9, 2023, 9:28 a.m.