| assemble_biopax_conversion_chuncks | Assemble Files from BioPAX Conversion Process |
| check_biopax | Check BioPAX by Plotting Certain Pathways |
| extract_biopax_interactions | Extract Pathway Interactions |
| extract_biopax_interactions_vect | Extract BioPAX Interactions |
| interactions_df_to_biopax_dt | Convert Interactions Dataframe into BioPAX Data Table |
| MAIN_biopax_comparison | MAIN - Compare BioPAX Objects |
| MAIN_combine_clean_biopax_unifyids | MAIN - Combine and Clean List of BioPAX Objects |
| MAIN_flatten_biopax | MAIN - Flatten BioPAX |
| MAIN_write_biopax | MAIN - Write BioPAX |
| pathway2RegulatoryGraph_Rancho | Pathway to Regulatory Graph |
| prepare_biopax_for_flattening | Prepare BioPAX for Flattening |
| update_RIGconvertbiopax | Update RIGconvertbiopax from GitHub |
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