check_biopax: Check BioPAX by Plotting Certain Pathways
In grishagin/RIGconvertbiopax: Convert BioPAX into Flat File and Back
Description
Usage
Arguments
Author(s)
Description
Plot regulatory graph for each supplied pathway.
Usage
1
2
check_biopax(biopax, pw_to_check = NULL, what = c("sample", "order", "id"),
output_identifier = NULL, verbose = TRUE)
Arguments
biopax
BioPAX object.
pw_to_check
Which pathways to check? Can take in (1) pathway ids or
(2) integer as number of pathways to randomly select and check
(3) vector of integers as pathway indices.
what
What's the format of supplied ids? Either id, or sample, or order.
output_identifier
What to append to output file?
verbose
Logical. Show all pertaining progress?
Author(s)
Ivan Grishagin
grishagin/RIGconvertbiopax documentation built on May 5, 2019, 9:18 a.m.
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Description Usage Arguments Author(s)
Description
Plot regulatory graph for each supplied pathway.
Usage
1 2 | check_biopax(biopax, pw_to_check = NULL, what = c("sample", "order", "id"),
output_identifier = NULL, verbose = TRUE)
|
Arguments
biopax |
BioPAX object. |
pw_to_check |
Which pathways to check? Can take in (1) pathway ids or (2) integer as number of pathways to randomly select and check (3) vector of integers as pathway indices. |
what |
What's the format of supplied ids? Either |
output_identifier |
What to append to output file? |
verbose |
Logical. Show all pertaining progress? |
Author(s)
Ivan Grishagin
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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