MAIN_write_biopax: MAIN - Write BioPAX

In grishagin/RIGconvertbiopax: Convert BioPAX into Flat File and Back

Description

Wrapper for a biopax_from_dt or splitbiopax_from_dt functions.

Usage

MAIN_write_biopax(combined_biopax, what = c("both", "onebig", "manysmall"),
  onebigfilename = NULL, pwtoextract_pattern = "inxight_pathways",
  pwtoextract = "default", bigtarname = "default",
  smalltarname = "default")

Arguments

combined_biopax	BioPAX object.
what	How to write: onebig (all pathways in one file), manysmall (one pathway per file) or both.
onebigfilename	In case one file with all pathways desired, which name should be used for it?
pwtoextract_pattern	Only pathways with IDs containing the pattern will be extracted.
pwtoextract	IDs of pathways to extract. Trumps pwtoextract_pattern.
bigtarname	Name of the tar.gz archive with one large pathway file.
smalltarname	Name of the tar.gz archive with individual pathway files.

Details

Returns either a graph or a dataframe with control-type components.

Author(s)

Ivan Grishagin

grishagin/RIGconvertbiopax documentation built on May 5, 2019, 9:18 a.m.