MAIN_biopax_comparison: MAIN - Compare BioPAX Objects
In grishagin/RIGconvertbiopax: Convert BioPAX into Flat File and Back

Description Usage Arguments Details Author(s)

Compare pathways in two BioPAX objects.

MAIN_biopax_comparison(pwid_to_compare = c("all", "none"),
  pwid_to_plot = c("none", "same", "test5"), new_biopax, orig_biopax,
  new_biopax_tag = "_new", orig_biopax_tag = "_orig", verbose = TRUE,
  pw_df_path = "default", source_name = NULL, groupnum = NULL,
  ngroups = NULL)

`pwid_to_compare`	Which pathway IDs to use for the comparison of control components? Takes either a vector of pathway IDs, or `all` to process all pathways, or `none` to not use this comparison at all.
`pwid_to_plot`	Which pathways to plot for subsequent visual inspection? Takes either a vector of pathway IDs, or `same` to process the same pathways as for control component comparison, or `test5` to plot 5 random pathways (can change to any number), or `none` to not use this comparison at all.
`new_biopax`	First BioPAX object.
`orig_biopax`	Second BioPAX object.
`new_biopax_tag`	First BioPAX Object tag.
`orig_biopax_tag`	BioPAX object.
`verbose`	Logical. Show all pertaining progress?
`pw_df_path`	Path to the source table with pathway, id, name, and source values.
`source_name`	BioPAX public source name.
`groupnum`	Split pathway ids into `ngroups` groups. Only process group #`groupnum` out of a total of `ngroups`.
`ngroups`	See `groupnum`.