extract_biopax_interactions_vect: Extract BioPAX Interactions
In grishagin/RIGconvertbiopax: Convert BioPAX into Flat File and Back

Takes in a BioPAX object and returns a dataframe of all "interactions", one per row, for a specified vector of pathways.

1 2	extract_biopax_interactions_vect(pw_id_vect = "all", biopax, biopax_source, tag = NULL)

`pw_id_vect`	Vector of pathway ids to process. Can also take a value `all` to process all pathways.
`biopax`	BioPAX object.
`biopax_source`	Name of the public source of the BioPAX object.
`tag`	String to append to the output file.

Also outputs the resultant dataframe as *.txt and *.xlsx files.

Ivan Grishagin

grishagin/RIGconvertbiopax documentation built on May 5, 2019, 9:18 a.m.

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