pathway2RegulatoryGraph_Rancho: Pathway to Regulatory Graph

In grishagin/RIGconvertbiopax: Convert BioPAX into Flat File and Back

Description

A different interpretation of a pathway2RegulatoryGraph function from rBiopaxParser package.

Usage

pathway2RegulatoryGraph_Rancho(biopax, pwid, expandSubpathways = TRUE,
  splitComplexMolecules = TRUE, useIDasNodenames = FALSE, verbose = FALSE,
  returnGraph = TRUE)

Arguments

biopax	BioPAX object.
pwid	Pathway ID.
expandSubpathways	Logical. Expand sub-pathways? Defaults to TRUE.
splitComplexMolecules	Logical. Split complex molecules into individual components? Defaults to TRUE.
useIDasNodenames	Logical. Use node ids as names? Defaults to FALSE.
verbose	Logical. Show all pertaining progress? Defaults to FALSE.
returnGraph	Logical. Return graph (as opposed to a dataframe of control-type components)? Defaults to TRUE.

Details

Returns either a graph or a dataframe with control-type components.

Author(s)

Ivan Grishagin

grishagin/RIGconvertbiopax documentation built on May 5, 2019, 9:18 a.m.