hammingDist: Construct a hamming distance matrix from an aligned...

Description Usage Arguments Details Value Examples

Description

Construct a hamming distance matrix from an aligned DNAStringSet

Usage

1

Arguments

x

DNAStringset with aligned sequences

Details

consmat: a matrix with positions row names and nucleotides as column manes. A consmat object includes the attributes:

n

<integer>; Number of reads per row.

freq

<logical>; Is it a frequency matrix or a count matrix.

offsetBases

<integer>; Offset

insertions

<integer>; Insertions

Value

A consmat object.

Examples

1
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gschofl/DR2S documentation built on May 17, 2019, 8:40 a.m.