partitionShortreads: Assign short reads from mapInit to haplotypes

Description Usage Arguments Value Examples

Description

Assign short reads from mapInit to haplotypes

Usage

1

Arguments

x

A DR2S object.

opts

list with options passed to the mapper.

...

Further arguments passed to methods.

Value

A DR2S object.

Examples

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## Not run: 
x <- DR2Smap(
  sample = "ID12300527",
  locus = "DPB1*04:01:01:01",
  datadir = "/path/to/data",
  outdir = "/path/to/output"
  ) %>%
  clear() %>%
  mapInit() %>%
  partitionLongreads() %>%
  mapIter() %>%
  partitionShortreads() %>%
  mapFinal() %>%
  polish() %>%
  report(blockWidth = 60)

## End(Not run)

gschofl/DR2S documentation built on May 17, 2019, 8:40 a.m.