refineAlignment: Refine the mapping of an allele by remapping to the checked...
In gschofl/DR2S: Dual redundant reference sequencing
Description
Usage
Arguments
Value
See Also
Description
Refine the mapping of an allele by remapping to the checked consensus
Usage
1
refineAlignment(x, hptype, report = FALSE, createIgv = TRUE, ...)
Arguments
x
A DR2S object.
hptype
The allele to refine
report
Should the function read a reference from the report folder?
Only internal parameter.
Value
Returns the updated DR2S object.
Creates an executable bash file for inspecting the mapping with IGV
See Also
Other DR2S mapper functions: cache,
clear, createDR2SConf,
mapFinal, mapInit,
mapIter, partitionLongreads,
polish,
reportCheckedConsensus,
report
gschofl/DR2S documentation built on May 17, 2019, 8:40 a.m.
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Description Usage Arguments Value See Also
Description
Refine the mapping of an allele by remapping to the checked consensus
Usage
1 | refineAlignment(x, hptype, report = FALSE, createIgv = TRUE, ...)
|
Arguments
x |
A |
hptype |
The allele to refine |
report |
Should the function read a reference from the report folder? Only internal parameter. |
Value
Returns the updated DR2S object.
Creates an executable bash file for inspecting the mapping with IGV
See Also
Other DR2S mapper functions: cache,
clear, createDR2SConf,
mapFinal, mapInit,
mapIter, partitionLongreads,
polish,
reportCheckedConsensus,
report
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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