plotPileupCoverage: Plot pileup coverage

In gschofl/DR2S: Dual redundant reference sequencing

Description

Plot pileup coverage

Usage

plotPileupCoverage(x, threshold = 0.2, range = NULL, thin = 0.1,
  width = 1, label = "", drop.indels = FALSE)

Arguments

x	A pileup object.
threshold	At which frequency do we visualise polymorphisms.
range	Which part along the x-axis do we plot.
thin	Plot only a fraction of the (non-polymorphic) positions.
width	Width of polymorphic positions.
label	Optional plot label.
drop.indels	Don't plot indels.

Value

A ggplot object.

Examples

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gschofl/DR2S documentation built on May 17, 2019, 8:40 a.m.