Fix more broken parsing of MICA and MICB
MICA
and MICB
has become MICA
and MICB
instead of HLA-MICA
and HLA-MICB
.MICA
and MICB
HLAGene
method x$get_extended_reference_set()
.nmdp_table()
, g_table
, and generate_nmdp_lookup()
return tibble
s instead of data.table
s.fetch_IMGTHLA()
to clone_IMGTHLA()
and update_IMGHTHLA()
to
pull_IMGTHLA()
(the old functions are aliased to the new).allele_table()
to parse the hla_nom.txt file.check_IMGTHLA()
to check if the local repo is up-to-date.noutr()
to extract sequences except for UTRs.db_path
argument to HLAGene()
and read_hla_xml()
to allow for
alternative repository locations.curl
as a dependency.HLAGene
method x$calculate_exon_distance_matrix()
.HLAGene
method x$get_closest_complete_neighbor()
gains an argument
partially = TRUE
that allows for partial allele matching.db_version()
returns a numeric_version
object instead of a character
string (#3).hlatools_version()
method for HLAGene objects (#2).locusname()
method for HLAGene objects (#1).exon()
, intron()
, and utr()
to extract feature sequences.HLAAllele
objects.NEWS.md
file to track changes to the package.Add the following code to your website.
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