API for gschofl/ncbi
Retrieve data from NCBI.

Global functions
Call Source code
Collection-class Man page
Compose Source code
EST Man page
GSS Man page
GeneidDBConnection-class Man page
Lineage Man page Source code
Lineage-class Man page
LineageList Man page
LineageList-class Man page
Partial Source code
Taxon-class Man page
TaxonDBConnection-class Man page
TaxonList Man page
TaxonList-class Man page
Taxon_full-class Man page
Taxon_minimal-class Man page
[ Man page
[,doi-method Man page
[,pubmed-method Man page
bind_list Source code
browsePubmed Man page
browsePubmed,doi-method Man page
browsePubmed,pubmed-method Man page
c Man page
c,doi-method Man page
c,pubmed-method Man page
camelise Source code
catchEFetchError Source code
clear_cache Man page Source code
collectionConstructor Man page Source code
collectionShower Man page Source code
collectionValidator Man page Source code
compact Source code
compactChar Source code
compactNA Source code
count_re Source code
createGeneidDB Man page Source code
createTaxonDB Man page Source code
create_if_not_exists Source code
db_bulk_insert Man page Source code
db_connect Man page Source code
db_count Man page Source code
db_create Man page Source code
db_disconnect Man page Source code
db_get_authority Source code
db_get_node Source code
db_get_other_name Source code
db_get_parent_taxid Source code
db_get_rank Source code
db_get_scientific_name Source code
db_get_type_material Source code
db_info Man page Source code
db_list_fields Man page
db_list_tables Man page
db_load Source code
db_query Man page Source code
do_log Source code
doi-class Man page
dup Source code
ellipsize Source code
fetch_file Source code
fetch_files Man page Source code
file_compare Man page Source code
geneidDBConnect Man page
getAbstract Man page
getAbstract,pubmed-method Man page
getAuthor Man page
getAuthor,pubmed-method Man page
getAuthority Man page
getByRank Man page
getCites Man page
getCites,pubmed-method Man page
getDoi Man page
getDoi,pubmed-method Man page
getIssue Man page
getIssue,pubmed-method Man page
getJournal Man page
getJournal,pubmed-method Man page
getLineage Man page
getOtherName Man page
getParentTaxID Man page
getPmid Man page
getPmid,pubmed-method Man page
getRank Man page
getScientificName Man page
getTaxID Man page
getTitle Man page
getTitle,pubmed-method Man page
get_args Source code
get_uids Source code
has_command Man page Source code
has_tables Man page Source code
has_webenv Source code
index_gi_taxid Source code
is.empty Source code
lineage_from_cache Source code
lineage_to_cache Source code
linebreak Man page Source code
makeCollectionClass Man page Source code
make_geneiddb Source code
make_taxondb Source code
merge_gi_taxid Source code
ncbi Man page
ncbi-package Man page
ncbi.taxonomy.path Source code
ncbi_sequences Source code
ncbi_taxon_ranks Source code
new_cache Man page Source code
new_taxon Man page Source code
new_taxon_by_geneid Man page Source code
now Source code
nucleotide Man page
onLoad Source code
onUnload Source code
parseAcc Source code
parseGenBank Man page Source code
parsePubmed Man page Source code
parseTSeqSet Man page Source code
parseTaxon Source code
parseUilist Source code
print.cache Source code
protein Man page
pubmed Man page Source code
pubmed-class Man page
rBind Man page Source code
readMerged Source code
readNames Source code
readNodes Source code
show Man page
show,doi-method Man page
show,pubmed-method Man page
show_Lineage Source code
show_Taxon Source code
show_cache Man page Source code
sqliteDB-class Man page
strip_ext Man page Source code
taxon Man page Source code
taxonByGeneID Man page Source code
taxonDB Man page Source code
taxonDBConnect Man page
trim Source code
updateGeneidDB Man page Source code
updateTaxonDB Man page Source code
valid_Lineage Source code
valid_TaxonMinimal Source code
with_localtime Source code
gschofl/ncbi documentation built on May 14, 2017, 4:12 p.m.