GSS: Retrieve sequences and annotations from the GSS database

In gschofl/ncbi: Retrieve data from NCBI.

Description

Retrieve sequences and annotations from the GSS database

Usage

  GSS(gi, rettype="fasta", retmax=25, parse=TRUE, ...)

Arguments

gi	‘GI’s or a valid NCBI search term.
rettype	Which type of data should be retrieved? ‘fasta’ (default), ‘gb’, ‘acc’, ‘seqid’, ‘gss’, ‘native’, or NULL (text ASN.1).
retmax	Maximal number of records to be retrieved (default: 25).
parse	Should the retrieved data be parsed?
...	Parameters passed on to the underlying efetch query.

Details

See the documentation at NCBI for more information.

Value

A gbRecord or an XStringSet instance.

gschofl/ncbi documentation built on May 17, 2019, 8:53 a.m.