taxonDBConnect: Create connections to a local NCBI Taxonomy or GeneID...
In gschofl/ncbi: Retrieve data from NCBI.
Description
Usage
Arguments
Details
Value
See Also
Description
These functions are not typically invoked by the user.
The path to the taxonomy and GeneID databases is
specified rather by setting the global option
ncbi.taxonomy.path.
Usage
1
2
3
taxonDBConnect(db_path=getOption("ncbi.taxonomy.path")
geneidDBConnect(db_path=getOption("ncbi.taxonomy.path")
Arguments
db_path
Path to the directory containing the local
taxonomy and GeneID databases. This path cshould be
configured by setting the option
ncbi.taxonomy.path.
Details
Run the codecreateTaxonDB and
odecreateGeneidDB to install the taxonomy and
geneid databases locally.
Value
A TaxonDBConnection or a
GeneidDBConnection, respectively.
See Also
gschofl/ncbi documentation built on May 17, 2019, 8:53 a.m.
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Description Usage Arguments Details Value See Also
Description
These functions are not typically invoked by the user.
The path to the taxonomy and GeneID databases is
specified rather by setting the global option
ncbi.taxonomy.path.
Usage
1 2 3 | taxonDBConnect(db_path=getOption("ncbi.taxonomy.path")
geneidDBConnect(db_path=getOption("ncbi.taxonomy.path")
|
Arguments
db_path |
Path to the directory containing the local
taxonomy and GeneID databases. This path cshould be
configured by setting the option
|
Details
Run the codecreateTaxonDB and odecreateGeneidDB to install the taxonomy and geneid databases locally.
Value
A TaxonDBConnection or a
GeneidDBConnection, respectively.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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