nucleotide: Retrieve sequences and annotations from the Nucleotide...

In gschofl/ncbi: Retrieve data from NCBI.

Description

Retrieve sequences and annotations from the Nucleotide database

Usage

  nucleotide(gi, rettype="fasta", retmax=25, parse=TRUE,
    ...)

Arguments

gi	‘GI’s or a valid NCBI search term.
rettype	Which type of data should be retrieved? ‘fasta’ (default), ‘gb’, ‘gbwithparts’, ‘acc’, ‘seqid’, ‘ft’, ‘fasta_cds_na’, ‘fasta_cds_aa’, ‘native’, or NULL (text ASN.1).
retmax	Maximal number of records to be retrieved (default: 25).
parse	Should the retrieved data be parsed?
...	Parameters passed on to the underlying efetch query.

Details

See the documentation at NCBI for more information.

Value

A gbRecord or an XStringSet instance.

gschofl/ncbi documentation built on May 17, 2019, 8:53 a.m.