.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/breeding_values.R
R/data.R
R/feim.R
R/fit_model.R
R/modify_qtl.R
R/null_model.R
R/optimize_qtl.R
R/permutations.R
R/plot_profile.R
R/plot_qtl.R
R/plot_sint.R
R/profile_qtl.R
R/qtl_effects.R
R/read_data.R
R/remim.R
R/resampling.R
R/search_qtl.R
R/simulate_qtl.R
R/utils.R
README.md
data/genoprob4x.RData
data/maps6x.RData
data/pheno4x.RData
data/pheno6x.RData
docs/.gitignore
docs/1-tutorial.Rmd
docs/1-tutorial.html
docs/1-tutorial.md
docs/1-tutorial_files/figure-html/unnamed-chunk-29-1.png
docs/1-tutorial_files/figure-html/unnamed-chunk-29-2.png
docs/1-tutorial_files/figure-html/unnamed-chunk-29-3.png
docs/1-tutorial_files/figure-html/unnamed-chunk-30-1.png
docs/1-tutorial_files/figure-html/unnamed-chunk-30-2.png
docs/1-tutorial_files/figure-html/unnamed-chunk-31-1.png
docs/1-tutorial_files/figure-html/unnamed-chunk-34-1.png
docs/1-tutorial_files/figure-html/unnamed-chunk-36-1.png
docs/1-tutorial_files/figure-html/unnamed-chunk-36-2.png
docs/1-tutorial_files/figure-html/unnamed-chunk-36-3.png
docs/1-tutorial_files/figure-html/unnamed-chunk-36-4.png
docs/1-tutorial_files/figure-html/unnamed-chunk-38-1.png
docs/1-tutorial_files/figure-html/unnamed-chunk-38-2.png
docs/1-tutorial_files/figure-html/unnamed-chunk-44-1.png
docs/2-tetraploid_example.Rmd
docs/2-tetraploid_example.html
docs/2-tetraploid_example.md
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-11-1.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-11-2.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-11-3.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-12-1.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-12-2.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-13-1.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-13-2.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-14-1.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-14-2.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-15-1.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-16-1.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-17-1.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-17-2.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-17-3.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-17-4.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-17-5.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-17-6.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-17-7.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-18-1.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-18-2.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-18-3.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-18-4.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-18-5.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-19-1.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-19-2.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-19-3.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-19-4.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-19-5.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-19-6.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-19-7.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-20-1.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-20-2.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-20-3.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-20-4.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-20-5.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-20-6.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-20-7.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-21-1.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-21-2.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-21-3.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-22-1.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-22-2.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-22-3.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-23-1.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-24-1.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-25-1.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-26-1.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-4-1.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-5-1.png
docs/2-tetraploid_example_files/figure-html/unnamed-chunk-6-1.png
docs/Mendeley.bib
docs/debug.log
docs/qtlpoly_0.1.0.pdf
docs/qtlpoly_0.2.1.pdf
inst/CITATION
man/breeding_values.Rd
man/feim.Rd
man/fit_model.Rd
man/genoprob4x.Rd
man/h.Rd
man/last.Rd
man/maps.Rd
man/modify_qtl.Rd
man/null_model.Rd
man/optimize_qtl.Rd
man/permuta.Rd
man/permutations.Rd
man/pheno.Rd
man/pheno4x.Rd
man/plot_profile.Rd
man/plot_qtl.Rd
man/plot_sint.Rd
man/profile_qtl.Rd
man/qtl_effects.Rd
man/read_data.Rd
man/remim.Rd
man/search_qtl.Rd
man/simulate_qtl.Rd
qtlpoly.Rproj