corrbased: Pearson correlation coefficient value of the miRNA genes...
In guldenolgun/NoRCE: NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment
View source: R/expressionBased.R
corrbased R Documentation
Pearson correlation coefficient value of the miRNA genes between
miRNA:mRNA for a given correlation cut-off and cancer.
Description
Pearson correlation coefficient value of the miRNA genes between
miRNA:mRNA for a given correlation cut-off and cancer.
Usage
corrbased(mirnagene, cancer, minAbsCor, databaseFile)
Arguments
mirnagene
Data frame of the miRNA genes in mature format
cancer
Name of the TCGA project code such as 'BRCA' that is analyzed
for miRNA-mRNA correlation. Possible cancer types ACC, BLCA, BRCA,
CESC, CHOL, COAD, COADREAD, DLBC, ESCA, GBMLGG, HNSC, KICH, KIPAN,
KIRC, KIRP, LGG, LIHC, LUAD, LUSC, OV, PAAD, PCPG, PRAD, READ, SARC,
SKCM, STAD, STES, TGCT, THCA, THYM, UCEC, UCS, UVM
minAbsCor
Cut-off value for the Pearson correlation coefficient of
the miRNA-mRNA
databaseFile
Path of the miRcancer.db file
Value
Data frame of the miRNA-mRNA correlation result
guldenolgun/NoRCE documentation built on Oct. 21, 2022, 11:48 a.m.
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View source: R/expressionBased.R
| corrbased | R Documentation |
Pearson correlation coefficient value of the miRNA genes between miRNA:mRNA for a given correlation cut-off and cancer.
Description
Pearson correlation coefficient value of the miRNA genes between miRNA:mRNA for a given correlation cut-off and cancer.
Usage
corrbased(mirnagene, cancer, minAbsCor, databaseFile)
Arguments
mirnagene |
Data frame of the miRNA genes in mature format |
cancer |
Name of the TCGA project code such as 'BRCA' that is analyzed for miRNA-mRNA correlation. Possible cancer types ACC, BLCA, BRCA, CESC, CHOL, COAD, COADREAD, DLBC, ESCA, GBMLGG, HNSC, KICH, KIPAN, KIRC, KIRP, LGG, LIHC, LUAD, LUSC, OV, PAAD, PCPG, PRAD, READ, SARC, SKCM, STAD, STES, TGCT, THCA, THYM, UCEC, UCS, UVM |
minAbsCor |
Cut-off value for the Pearson correlation coefficient of the miRNA-mRNA |
databaseFile |
Path of the miRcancer.db file |
Value
Data frame of the miRNA-mRNA correlation result
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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