corrbasedMrna: Pearson correlation coefficient value of the mRNA genes...
In guldenolgun/NoRCE: NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment
View source: R/expressionBased.R
corrbasedMrna R Documentation
Pearson correlation coefficient value of the mRNA genes between
miRNA:mRNA for a given correlation cut-off and cancer.
Description
Pearson correlation coefficient value of the mRNA genes between
miRNA:mRNA for a given correlation cut-off and cancer.
Usage
corrbasedMrna(mRNAgene, cancer, minAbsCor, databaseFile)
Arguments
mRNAgene
Data frame of the mRNA genes
cancer
Name of the TCGA project code such as 'BRCA' that is analyzed
for miRNA-mRNA correlation. Possible cancer types ACC, BLCA, BRCA,
CESC, CHOL, COAD, COADREAD, DLBC, ESCA, GBMLGG, HNSC, KICH, KIPAN,
KIRC, KIRP, LGG, LIHC, LUAD, LUSC, OV, PAAD, PCPG, PRAD, READ, SARC,
SKCM, STAD, STES, TGCT, THCA, THYM, UCEC, UCS, UVM
minAbsCor
Cut-off value for the Pearson correlation coefficient of
the miRNA-mRNA
databaseFile
Path of miRcancer.db file
Value
Data frame of the miRNA-mRNA correlation result
guldenolgun/NoRCE documentation built on Oct. 21, 2022, 11:48 a.m.
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View source: R/expressionBased.R
| corrbasedMrna | R Documentation |
Pearson correlation coefficient value of the mRNA genes between miRNA:mRNA for a given correlation cut-off and cancer.
Description
Pearson correlation coefficient value of the mRNA genes between miRNA:mRNA for a given correlation cut-off and cancer.
Usage
corrbasedMrna(mRNAgene, cancer, minAbsCor, databaseFile)
Arguments
mRNAgene |
Data frame of the mRNA genes |
cancer |
Name of the TCGA project code such as 'BRCA' that is analyzed for miRNA-mRNA correlation. Possible cancer types ACC, BLCA, BRCA, CESC, CHOL, COAD, COADREAD, DLBC, ESCA, GBMLGG, HNSC, KICH, KIPAN, KIRC, KIRP, LGG, LIHC, LUAD, LUSC, OV, PAAD, PCPG, PRAD, READ, SARC, SKCM, STAD, STES, TGCT, THCA, THYM, UCEC, UCS, UVM |
minAbsCor |
Cut-off value for the Pearson correlation coefficient of the miRNA-mRNA |
databaseFile |
Path of miRcancer.db file |
Value
Data frame of the miRNA-mRNA correlation result
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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