extractBiotype: Get the biotype of the non-coding genes. It is suitable for...

In guldenolgun/NoRCE: NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment

Get the biotype of the non-coding genes. It is suitable for the GENCODE gtf files

Description

Get the biotype of the non-coding genes. It is suitable for the GENCODE gtf files

Usage

extractBiotype(gtfFile)

Arguments

gtfFile

Path of the input gtf file which contains biotype information. The gtf file must be provided from the Ensembl or Gencode site. For space efficiency, gft files should be in a zip format.

Value

Tabular form of the gtf file with the required features such as gene id and biotypes

Examples

## Not run: 
fileImport<-system.file("extdata", "temp.gtf", package = "NoRCE")
gtf <- extractBiotype(gtfFile = fileImport)

## End(Not run)

guldenolgun/NoRCE documentation built on Oct. 21, 2022, 11:48 a.m.