getReactomeDiagram: Display the enriched Reactome diagram of the given Reactome...
In guldenolgun/NoRCE: NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment

getReactomeDiagram

R Documentation

Display the enriched Reactome diagram of the given Reactome pathway id. This function is specific to only one pathway id and identifies the enriched genes in the diagram.

Description

Display the enriched Reactome diagram of the given Reactome pathway id. This function is specific to only one pathway id and identifies the enriched genes in the diagram.

Usage

getReactomeDiagram(mrnaObject, pathway, imageFormat)

Arguments

`mrnaObject`	Output of enrichment results
`pathway`	Reactome pathway term
`imageFormat`	Image format of the diagram. Possible image formats are 'png', 'svg'

Value

Shows reactome diagram marked with an enriched genes in a browser

Examples

## Not run: 
br_enr<-reactomeEnrichment(genes = breastmRNA,org_assembly='hg19')

getReactomeDiagram(mrnaObject = br_enr,pathway = br_enr@ID[1],
                   imageFormat = 'png')
                   
## End(Not run)

guldenolgun/NoRCE documentation built on Oct. 21, 2022, 11:48 a.m.