gusef/IrisSpatialFeatures: A package to extract spatial features based on multiplex IF images
IrisSpatialFeatures reads the output of the PerkinElmer inForm software and calculates a variety of spatial statistics. In addition to simple counts, it can derive average nearest neighbors for each cell-type and interaction summary profiles for each celltype. These statistics are derived across images, both overall and regions of interest as defined by user defined masks.
Getting started
Browse package contents
Package details |
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| Author | Daniel Gusenleitner, Jason L. Weirather |
| Bioconductor views | FeatureExtraction SingleCell |
| Maintainer | Daniel Gusenleitner <gusef24@gmail.com> |
| License | MIT + file LICENSE |
| Version | 1.3.4 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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