autocorVsTaxonNum: Compute slope for increasing number of taxa versus their...

In hallucigenia-sparsa/seqtime: Time Series Analysis of Sequencing Data

Compute slope for increasing number of taxa versus their autocorrelation

Description

The taxa are added in decreasing order of abundance.

Usage

autocorVsTaxonNum(ts, lag = 1, plot = FALSE, col = "black",
  pch = "+")

Arguments

ts	a matrix with objects as rows and time points as columns
lag	the lag for which autocorrelation is computed
plot	plot the increasing number of taxa versus their autocorrelation
col	plot color
pch	plot point character

Value

a list with the taxon number, autocorrelations, slope and p-value

Examples

## Not run: 
N=10
A=generateA(N,c=0.1)
soi.ts=soi(N=N,I=1000,A=A,tend=100)
res=autocorVsTaxonNum(soi.ts, plot=TRUE)

## End(Not run)

hallucigenia-sparsa/seqtime documentation built on Jan. 9, 2023, 11:53 p.m.