removeLowAbundance: Remove lowest abundance species
In hallucigenia-sparsa/seqtime: Time Series Analysis of Sequencing Data
View source: R/removeLowAbundance.R
removeLowAbundance R Documentation
Remove lowest abundance species
Description
Removes a number of lowest total abundace species from a dataset generated with generateDataSet.
Note that the function uses the normalized dataset to decide which species to remove, but returns the absolute dataset.
Usage
removeLowAbundance(dataset, removeN)
Arguments
dataset
Abundance dataset
removeN
Number of species to remove
Value
Dataset without N lowest abundance species
Examples
klemm = generateA(N=10, type="klemm", c=0.5)
dataset = generateDataSet(100, klemm)
dataset = removeLowAbundance(dataset, 10)
hallucigenia-sparsa/seqtime documentation built on Jan. 9, 2023, 11:53 p.m.
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View source: R/removeLowAbundance.R
| removeLowAbundance | R Documentation |
Remove lowest abundance species
Description
Removes a number of lowest total abundace species from a dataset generated with generateDataSet. Note that the function uses the normalized dataset to decide which species to remove, but returns the absolute dataset.
Usage
removeLowAbundance(dataset, removeN)
Arguments
dataset |
Abundance dataset |
removeN |
Number of species to remove |
Value
Dataset without N lowest abundance species
Examples
klemm = generateA(N=10, type="klemm", c=0.5) dataset = generateDataSet(100, klemm) dataset = removeLowAbundance(dataset, 10)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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