API for hallucigenia-sparsa/seqtime
Time Series Analysis of Sequencing Data

Global functions
KLD Source code
addNoise Man page Source code
addNoiseToCommMatrix Source code
analyseTSComparison Source code
analyseTaxaInA Man page Source code
applyPerturbation Source code
assignColorsToGroups Source code
assignTaxonLevelsToA Man page Source code
autocorVsTaxonNum Man page Source code
binByMemory Man page Source code
binaryToPerturb Man page Source code
caporaso_F4FecesL6 Man page
caporaso_F4LPalmL6 Man page
caporaso_F4RPalmL6 Man page
caporaso_F4TongueL6 Man page
caporaso_M3FecesL6 Man page
compareFit Source code
compareTS Man page Source code
computeCentroid Source code
computeMSD Source code
computeMSDCoordinates Source code
computeMSDValueCoordinates Source code
computeNoisetype Source code
computeOandD Source code
countInteractions Source code
countSpecies Source code
customizeGeneratorNames Source code
david_stoolA_metadata Man page
david_stoolA_otus Man page
david_stoolB_metadata Man page
david_stoolB_otus Man page
david_stool_lineages Man page
doc Man page Source code
edges.relink Source code
envGrowthChanges Man page Source code
fill.graph.to.N Source code
filterData Source code
filterTaxonMatrix Man page Source code
firstup Source code Source code
fitDistrib Source code
gKL Source code
generate.parameters Source code
generateA Man page Source code
generateAbundances Man page Source code
generateDataSet Man page Source code
generateRandA Source code
generateSubset Source code
generateTS Man page Source code
get.kld Source code
getAStats Man page Source code
getColorVector Source code
getConnectance Man page Source code
getCrossCorOriPredStepwise Source code
getCrossCorrel Source code
getCrossOriPredFull Source code
getIndicesOfTopNOTUsInProcessedDavidData Source code
getMeanAutoCWR2 Source code
getMeanAutoKLD Source code
getMeanAutocor Source code
getMeanCWR2 Source code
getMeanCrosscor Source code
getMeanKLD Source code
getPPV Source code
getPep Man page Source code
getPerturbedIndices Source code
getProbab Source code
getProcessedDavidData Source code
getSensitivity Source code
getStrength Source code
getTaxonomy Man page Source code
getTransitionProbs Source code
glv Man page Source code
glvsolve Source code
hill Man page Source code
identifyDistrib Source code
identifyDistribs Source code
identifyNoisetypes Man page Source code
interpolate Man page Source code
interpolateSub Source code
is.whole Source code
is.whole.matrix Source code
is.wholenumber Source code
isFullyconnected Source code
klemm.game Source code
limits Man page Source code
limitsQuality Man page Source code
limitscolumnwise Source code
make.full.clique Source code
modifyA Man page Source code
my.pca Source code
noisetypeFromSlope Source code
noisetypes Man page Source code
normalize Man page Source code
ntTaxonLoop Source code
onAttach Source code
perturbToBinary Man page Source code
perturbation Man page Source code
pielou Source code
plotA Man page Source code
plotAbundanceVsNoisetypes Man page Source code
plotNoisetypes Man page Source code
plotNoisetypesVsHurst Man page Source code
plotTSComparison Source code
powerspec Man page Source code
rJSD Source code
rad Man page Source code
randp Source code
rarefyFilter Man page Source code
rateFunc Source code
reduce_deactive_by_identical Source code
removeLowAbundance Man page Source code
reset.activity.lists Source code
restrictedleastsquare Source code
ricker Man page Source code
run.SOI Source code
seqtime Man page
seqtime-package Man page
sheldon Man page Source code
simCountMat Man page Source code
simCounts Source code
simDecay Man page Source code
simHubbell Man page Source code
simNoiseMat Man page Source code
simUntb Man page Source code
sliceTS Man page Source code
soi Man page Source code
sparse_IAs Source code
sparse_democratic Source code
taylor Man page Source code
testStability Man page Source code
timeDecay Man page Source code
tsDiagnostic Man page Source code
tsJumpStats Man page Source code
tsplot Man page Source code
tsubsample Man page Source code
varEvol Man page Source code
hallucigenia-sparsa/seqtime documentation built on Oct. 25, 2018, 2:12 p.m.