sliceTS: Slice time series

In hallucigenia-sparsa/seqtime: Time Series Analysis of Sequencing Data

Slice time series

Description

Store slices of previously generated time series in the input folder and store them in the output folder.

Usage

sliceTS(slices = NULL, slice.def.path = "", input.folder = "",
  output.folder = "", expIds = c())

Arguments

slices	a matrix with rows and 2 columns, where each row codes the time series identifier, the first column the start and the second the end time point; NA means until end of the time series
slice.def.path	path to a slice definition file, which has two tab-delimited columns for the start and end time points, respectively; NA means until end of the time series
input.folder	location of time series and settings sub folders
output.folder	folder in which all slices go (no sub-folders)
expIds	set of experiment identifiers to process

Details

The input folder is expected to contain the folder structure as generated by generateTS.R (timeseries subfolder containing experiment subfolders). Sliced time series are stored in the output folder without subfolders.

hallucigenia-sparsa/seqtime documentation built on Jan. 9, 2023, 11:53 p.m.