caporaso_F4LPalmL6: Caporaso Left Palm Sequencing Data for Subject F4 on level 6
In hallucigenia-sparsa/seqtime: Time Series Analysis of Sequencing Data
caporaso_F4LPalmL6 R Documentation
Caporaso Left Palm Sequencing Data for Subject F4 on level 6
Description
Mostly genus-level counts (L6) from left palm skin samples of subject F4 over time.
Usage
data(caporaso_F4LPalmL6)
Format
An object of class data.frame with 1295 rows and 133 columns.
Details
Subject F4 was followed over 6 months. V4 16S region was sequenced. A counter was attached to genera appearing more than once in the count table.
Value
TaxonxSample matrix of size 1295 x 133
References
Caporaso et al. (2011) Moving pictures of the human microbiome Genome Biology vol. 12:R50
Genome Biology
Examples
data(caporaso_F4LPalmL6)
# sort taxa by abundance and print top 10 most abundant taxa
sorted <- sort(apply(caporaso_F4LPalmL6,1,sum),decreasing = TRUE, index.return = TRUE)
rownames(caporaso_F4LPalmL6)[sorted$ix[1:10]]
hallucigenia-sparsa/seqtime documentation built on Jan. 9, 2023, 11:53 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| caporaso_F4LPalmL6 | R Documentation |
Caporaso Left Palm Sequencing Data for Subject F4 on level 6
Description
Mostly genus-level counts (L6) from left palm skin samples of subject F4 over time.
Usage
data(caporaso_F4LPalmL6)
Format
An object of class data.frame with 1295 rows and 133 columns.
Details
Subject F4 was followed over 6 months. V4 16S region was sequenced. A counter was attached to genera appearing more than once in the count table.
Value
TaxonxSample matrix of size 1295 x 133
References
Caporaso et al. (2011) Moving pictures of the human microbiome Genome Biology vol. 12:R50 Genome Biology
Examples
data(caporaso_F4LPalmL6) # sort taxa by abundance and print top 10 most abundant taxa sorted <- sort(apply(caporaso_F4LPalmL6,1,sum),decreasing = TRUE, index.return = TRUE) rownames(caporaso_F4LPalmL6)[sorted$ix[1:10]]
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.