findInFlatfile: Find Taxa and Accession Numbers in GenBank Flatfiles
In heibl/megaptera: MEGAPhylogeny Techniques in R
Description
Usage
Arguments
Value
View source: R/findInFlatfile.R
Description
Checks if any entries of a taxon are present in a given GenBank
flatfile based on regular expressions. The motivation is to save computation
time by not parsing files that do not include the taxon of interest.
Usage
1
findInFlatfile(file, taxon = NULL, acc = NULL)
Arguments
file
A character string giving the name of the GenBank flatfile.
taxon
A character string giving the name of the taxon.
acc
A character string giving the accession number.
Value
Logical, returns TRUE, if taxon is included with one or
more entries in file.
heibl/megaptera documentation built on Jan. 17, 2021, 3:34 a.m.
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Description Usage Arguments Value
View source: R/findInFlatfile.R
Description
Checks if any entries of a taxon are present in a given GenBank flatfile based on regular expressions. The motivation is to save computation time by not parsing files that do not include the taxon of interest.
Usage
1 | findInFlatfile(file, taxon = NULL, acc = NULL)
|
Arguments
file |
A character string giving the name of the GenBank flatfile. |
taxon |
A character string giving the name of the taxon. |
acc |
A character string giving the accession number. |
Value
Logical, returns TRUE, if taxon is included with one or
more entries in file.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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