API for heibl/megaptera
MEGAPhylogeny Techniques in R

Global functions
EFetchHigherTaxon Man page
EFetchLocus Man page
EFetchXML Man page Source code
MAD Man page Source code
NCBI.wrap Man page Source code
NCBIeaa Man page
XML2acc Man page Source code
addNbAcc Man page Source code
addRanks Man page
addSingleTip Man page Source code
addTips Man page Source code
alignGenus Man page Source code
alignSisterClades Man page Source code
alignSpecies Man page Source code
alignSubtree Source code
as.Linnean Man page Source code
boxplotMSA Man page Source code
cetacea Man page
check.TaxAgainstPhy Man page Source code
checkBlocks Man page Source code
checkExcludedSpec Man page Source code
checkIdentityCoverage Man page Source code
checkMissingSpec Man page Source code
checkSpecLocus Man page Source code
checkSpecies Man page Source code
checkStatus Man page Source code
class.dbPars Man page
compare.phylo.backbone Man page
compareToRef Man page Source code
comprehensiveGuidetree Man page Source code
conn Man page
coverage Man page Source code
cropToReference Man page Source code
dbAutoFillTaxonomy Man page Source code
dbChangeSpecName Man page Source code
dbChooseRef Man page Source code
dbDeleteSpec Man page Source code
dbExcludeIndet Man page Source code
dbExcludeSpec Man page Source code
dbIncludeSpec Man page Source code
dbMaxGIPerSpec Man page Source code
dbPReadDNA Man page Source code
dbPars Man page
dbPars-class Man page
dbProgress Source code
dbReadDNA Man page Source code
dbReadLocus Man page Source code
dbReadReference Man page Source code
dbReadTaxonomy Man page Source code
dbSummaryMSA Man page Source code
dbSummaryTaxonomy Source code
dbTableNames Man page Source code
dbUpdateLocus Man page
dbUpdateReference Man page Source code
dbUpdateReference_Clade Source code
dbUpdateSurrogate Man page Source code
dbUpdateTaxonomy Man page Source code
dbWriteDNA Man page Source code
dbWriteDNAbin Man page
dbWriteMSA Man page Source code
dbWriteString Man page Source code
dbconnect Man page Source code
decomposePhylo Source code
downloadSequences Man page Source code
dropExtendedIngroup Man page Source code
extractIGS Man page Source code
extractLocus Man page Source code
filter.alignment Man page
findRoot Man page Source code
fixTaxonomy Man page Source code
force.mp Man page
fuzzy.match Man page Source code
getGeneRange Man page
getLineage Man page Source code
getMaxDist Man page Source code
giConsensus Man page Source code
harmonizePhyloData Source code
higherTaxaOnEdges Man page Source code
htmlTable Man page Source code
icContingency Man page Source code
indet.strings Man page Source code
insert.tip.phylo Man page
is.Linnean Man page Source code
is.alignable Man page Source code
is.ingroup Man page Source code
loci Man page
locus Man page
locus-class Man page
locusRef Man page
locusRef-class Man page
mafft.merge Man page
markersGenbank Man page
maxDist Man page
maxDistMPI Man page Source code
md5 Man page Source code
meanPairwiseIdentity Man page Source code
megaptera Man page
megaptera-package Man page
megaptera2Rmarkdown Man page Source code
megapteraHeatmap Man page
megapteraPars Man page
megapteraPars-class Man page
megapteraProj Man page
megapteraProj-class Man page
mergeSubMSA Source code
mergeSubMSA2 Source code
myDist Man page Source code Source code
ncbiGenome Man page Source code
ncbiLineage Man page
ncbiTaxonomy Man page Source code
nonmonophyletic Source code
nucleotideOverlap Man page Source code
opal.merge Source code
optimizeCoverage Man page Source code
optimizeIdentity Man page Source code
overlappingPairs Source code
overlappingPairs2 Source code
pars Man page
parseTaxonomy Source code
pdfPhyloA0 Source code
plotPhyloWithClassification Man page Source code
proParte Source code
prune.phylo.rank Man page Source code
revCompTest Man page
robustXMLparse Man page Source code
select.seqs Man page
setLocus Man page Source code
slicePhylo Source code
slog Man page Source code
sortRanks Man page
specCons Man page Source code
speciesConsensus Man page Source code
splitAlignment Man page Source code
splitGiTaxon Man page Source code
splitNonoverlapping Source code
sql.conform Man page Source code
sql.wrap Man page Source code
sqlTaxonomyHeader Man page Source code
stepA Man page Source code
stepAA Man page
stepB Man page Source code
stepBOLD Man page Source code
stepBX Man page Source code
stepC Man page Source code
stepD Man page Source code
stepE Man page Source code
stepF Man page Source code
stepG Man page Source code
stepGG Source code
stepH Man page Source code
stepI Man page Source code
stepPASTAin Source code
stepPASTAout Source code
stepPOLENTA Source code Source code
strip.infraspec Man page Source code
strip.spec Man page Source code
summary.sproj Man page
supermatrix Man page Source code
supermatrix.mrbayes Man page Source code
surrogateTips Man page Source code
tab Man page
tax Man page
tax2tree Man page Source code
taxdump2phylo Man page Source code
taxdumpAddNode Man page Source code
taxdumpDaughters Man page Source code
taxdumpDropTip Source code
taxdumpHigherRank Source code
taxdumpLineage Man page Source code
taxdumpMRCA Man page Source code
taxdumpSubset Man page Source code
taxon Man page
taxon-class Man page
taxonGuidetree Man page
taxonGuidetree-class Man page
taxonomy2html Man page Source code
term Man page Source code
valid.NCBI.taxon Man page Source code
whereToInsert Man page Source code
wrapSQL Man page Source code
write.dna.spectable Man page
heibl/megaptera documentation built on Oct. 13, 2017, 8:47 p.m.