stepA: Step A: Creating a Project Taxonomy

In heibl/megaptera: MEGAPhylogeny Techniques in R

Description

Creates a project taxonomy from the NCBI taxonomy (see ncbiTaxonomy).

Usage

stepA(x)

Arguments

x	An object of class megapteraProj.

Value

None. stepA is called for its side effects: (1) a taxonomic classifiaction is stored in the pgSQL database; (2) a log file is written to the log directory of the project directory.

Note

Any subsequent call to stepA will overwrite the existing taxonomy table. As a consequence, stepB and following steps will have to be rerun also.

See Also

megapteraProj for bundling the project's input information and ncbiTaxonomy for downloading the NCBI taxonomy; the next step in the pipeline is stepB.

heibl/megaptera documentation built on Jan. 17, 2021, 3:34 a.m.