prune.phylo.rank: Prune Phylogenies to Higher Ranks
In heibl/megaptera: MEGAPhylogeny Techniques in R
Description
Usage
Arguments
Value
See Also
View source: R/prune.phylo.rank.R
Description
Prune tips of a certain taxonomic rank from an object of class
phylo and obtain a new phylo object whose tips
are of a higher rank.
Usage
1
prune.phylo.rank(phy, tax, rank = "genus")
Arguments
phy
An object of class phylo.
tax
A data frame containing taxonomic information for the tip labels
in phy.
rank
A character string giving the name of a column (= taxonomic rank)
in tax to which phy will be pruned.
Value
An object of class phylo.
See Also
addTips and addSingleTip to add terminal nodes to a phylogeny.
heibl/megaptera documentation built on Jan. 17, 2021, 3:34 a.m.
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Description Usage Arguments Value See Also
View source: R/prune.phylo.rank.R
Description
Prune tips of a certain taxonomic rank from an object of class
phylo and obtain a new phylo object whose tips
are of a higher rank.
Usage
1 | prune.phylo.rank(phy, tax, rank = "genus")
|
Arguments
phy |
An object of class |
tax |
A data frame containing taxonomic information for the tip labels
in |
rank |
A character string giving the name of a column (= taxonomic rank)
in |
Value
An object of class phylo.
See Also
addTips and addSingleTip to add terminal nodes to a phylogeny.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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