selectMSA: Selection of Multiple Sequence Alignments
In heibl/megaptera: MEGAPhylogeny Techniques in R
Description
Selection of Multiple Sequence Alignments
Usage
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selectMSA(
megProj,
min.n.seq = 3,
blocks = "split",
row.confid = 0,
col.confid = 0,
trim.ends = 0,
locus.coverage = 0,
global.coverage = 0,
subset.locus,
subset.species,
exclude.locus,
exclude.species,
core.locus,
core.species,
best.sampled.congeneric = FALSE,
equal.taxon.sets = TRUE,
use.outgroup = TRUE,
protect.outgroup = FALSE,
squeeze.outgroup
)
heibl/megaptera documentation built on Jan. 17, 2021, 3:34 a.m.
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Description
Selection of Multiple Sequence Alignments
Usage
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 | selectMSA(
megProj,
min.n.seq = 3,
blocks = "split",
row.confid = 0,
col.confid = 0,
trim.ends = 0,
locus.coverage = 0,
global.coverage = 0,
subset.locus,
subset.species,
exclude.locus,
exclude.species,
core.locus,
core.species,
best.sampled.congeneric = FALSE,
equal.taxon.sets = TRUE,
use.outgroup = TRUE,
protect.outgroup = FALSE,
squeeze.outgroup
)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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