taxdumpLineage: Utilities for NCBI Taxdump
In heibl/megaptera: MEGAPhylogeny Techniques in R
Description
Usage
Arguments
Details
Value
See Also
View source: R/taxdumpLineage.R
Description
Get all higher ranks including a given taxon.
Usage
1
taxdumpLineage(tax, taxon, highest.rank)
Arguments
tax
Either an object of class megapteraProj or a data
frame as returned by dbReadTaxonomy.
taxon
A character string giving the name of the taxon.
highest.rank
A character string giving the highest rank returned; if
missing (default) the highest rank returned is the root.
Details
If taxon is coded as a synonym, it will be replaced by the
corresponding accepted name and a warning will be issued.
Value
A data frame.
See Also
taxdumpAddNode, taxdumpChildren,
taxdumpMRCA, taxdumpSubset,
taxdump2phylo
heibl/megaptera documentation built on Jan. 17, 2021, 3:34 a.m.
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Description Usage Arguments Details Value See Also
View source: R/taxdumpLineage.R
Description
Get all higher ranks including a given taxon.
Usage
1 | taxdumpLineage(tax, taxon, highest.rank)
|
Arguments
tax |
Either an object of class |
taxon |
A character string giving the name of the taxon. |
highest.rank |
A character string giving the highest rank returned; if missing (default) the highest rank returned is the root. |
Details
If taxon is coded as a synonym, it will be replaced by the
corresponding accepted name and a warning will be issued.
Value
A data frame.
See Also
taxdumpAddNode, taxdumpChildren,
taxdumpMRCA, taxdumpSubset,
taxdump2phylo
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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