taxdumpMRCA: Utilities for NCBI Taxdump
In heibl/megaptera: MEGAPhylogeny Techniques in R
Description
Usage
Arguments
Value
See Also
Description
Get most-recent common ancestor (MRCA) of a group of species.
Usage
1
taxdumpMRCA(x, species, tip.rank)
Arguments
x
Either an object of class megapteraProj or a data
frame containing a taxonomy table in parent-child format as returned by
dbReadTaxonomy.
species
A vector of mode "character" giving the species names.
Can be missing, in which case the root is returned.
tip.rank
A character string giving the name a rank.
Value
A character string giving the name a the MRCA.
See Also
ncbiTaxonomy for downloading the NCBI taxonomy and
dbReadTaxonomy for reading the project taxonomy; other
taxdump-related tools: taxdumpAddNode,
taxdumpChildren, taxdumpDropTip,
taxdumpHigherRank, taxdumpSubset,
taxdump2phylo and taxdump_isTerminal.
heibl/megaptera documentation built on Jan. 17, 2021, 3:34 a.m.
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Description Usage Arguments Value See Also
Description
Get most-recent common ancestor (MRCA) of a group of species.
Usage
1 | taxdumpMRCA(x, species, tip.rank)
|
Arguments
x |
Either an object of class |
species |
A vector of mode |
tip.rank |
A character string giving the name a rank. |
Value
A character string giving the name a the MRCA.
See Also
ncbiTaxonomy for downloading the NCBI taxonomy and
dbReadTaxonomy for reading the project taxonomy; other
taxdump-related tools: taxdumpAddNode,
taxdumpChildren, taxdumpDropTip,
taxdumpHigherRank, taxdumpSubset,
taxdump2phylo and taxdump_isTerminal.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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