taxdumpDropTip: Utilities for NCBI Taxdump
In heibl/megaptera: MEGAPhylogeny Techniques in R
Description
Usage
Arguments
See Also
View source: R/taxdumpDropTip.R
Description
Get subset of a taxonomy table in parent-child format.
Usage
1
taxdumpDropTip(tax, id)
Arguments
tax
Either an object of class megapteraProj or a data
frame containing a taxonomy table in parent-child format as returned by
dbReadTaxonomy.
id
A vector of mode "numeric" or "character", giving one
or more IDs or names of a terminal node (tip).
See Also
ncbiTaxonomy for downloading the NCBI taxonomy and
dbReadTaxonomy for reading the project taxonomy; other
taxdump-related tools: taxdumpAddNode,
taxdumpChildren, taxdumpHigherRank,
taxdumpMRCA, taxdumpSubset,
taxdump2phylo and taxdump_isTerminal.
heibl/megaptera documentation built on Jan. 17, 2021, 3:34 a.m.
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Description Usage Arguments See Also
View source: R/taxdumpDropTip.R
Description
Get subset of a taxonomy table in parent-child format.
Usage
1 | taxdumpDropTip(tax, id)
|
Arguments
tax |
Either an object of class |
id |
A vector of mode |
See Also
ncbiTaxonomy for downloading the NCBI taxonomy and
dbReadTaxonomy for reading the project taxonomy; other
taxdump-related tools: taxdumpAddNode,
taxdumpChildren, taxdumpHigherRank,
taxdumpMRCA, taxdumpSubset,
taxdump2phylo and taxdump_isTerminal.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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