taxdump2phylo: Utilities for NCBI Taxdump
In heibl/megaptera: MEGAPhylogeny Techniques in R
Description
Usage
Arguments
Value
See Also
View source: R/taxdump2phylo.R
Description
Convert a taxonomy table in parent-child format into an object
of class phylo.
Usage
1
taxdump2phylo(tax, tip.rank)
Arguments
tax
A data frame representing a taxonomy in parent-child format as
returned by dbReadTaxonomy.
tip.rank
A character string giving the name of a rank. This rank will be
treated as tip rank, i.e. all taxa of lower rank will be dicarded.
Value
An object of class phylo.
See Also
dbReadTaxonomy,
taxdumpChildren,taxdumpLineage,
taxdumpSubset, taxdumpAddNode.
heibl/megaptera documentation built on Jan. 17, 2021, 3:34 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value See Also
View source: R/taxdump2phylo.R
Description
Convert a taxonomy table in parent-child format into an object
of class phylo.
Usage
1 | taxdump2phylo(tax, tip.rank)
|
Arguments
tax |
A data frame representing a taxonomy in parent-child format as
returned by |
tip.rank |
A character string giving the name of a rank. This rank will be treated as tip rank, i.e. all taxa of lower rank will be dicarded. |
Value
An object of class phylo.
See Also
dbReadTaxonomy,
taxdumpChildren,taxdumpLineage,
taxdumpSubset, taxdumpAddNode.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.