taxdump_isTerminal: Utilities for NCBI Taxdump
In heibl/megaptera: MEGAPhylogeny Techniques in R
Description
Usage
Arguments
See Also
View source: R/taxdump_isTerminal.R
Description
Check if nodes are terminal, e.g. they are not parent nodes.
Usage
1
taxdump_isTerminal(tax, id)
Arguments
tax
A data frame containing a parent-child table as returned by
dbReadTaxonomy.
id
A vector of mode "numeric" giving the ID of the nodes to be
tested; can be missing an then all nodes are tested.
See Also
ncbiTaxonomy for downloading the NCBI taxonomy and
dbReadTaxonomy for reading the project taxonomy; other
taxdump-related tools: taxdumpAddNode,
taxdumpChildren, taxdumpDropTip,
taxdumpHigherRank, taxdumpMRCA,
taxdumpSubset, taxdump2phylo
heibl/megaptera documentation built on Jan. 17, 2021, 3:34 a.m.
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Description Usage Arguments See Also
View source: R/taxdump_isTerminal.R
Description
Check if nodes are terminal, e.g. they are not parent nodes.
Usage
1 | taxdump_isTerminal(tax, id)
|
Arguments
tax |
A data frame containing a parent-child table as returned by
|
id |
A vector of mode |
See Also
ncbiTaxonomy for downloading the NCBI taxonomy and
dbReadTaxonomy for reading the project taxonomy; other
taxdump-related tools: taxdumpAddNode,
taxdumpChildren, taxdumpDropTip,
taxdumpHigherRank, taxdumpMRCA,
taxdumpSubset, taxdump2phylo
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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