taxdumpRankOrder: Utilities for NCBI Taxdump
In heibl/megaptera: MEGAPhylogeny Techniques in R
Description
Usage
Arguments
Value
See Also
View source: R/taxdumpRankOrder.R
Description
Return the order of ranks in a taxonomy from highest to lowest.
Usage
1
Arguments
x
Either an object of class megapteraProj or a data
frame containing a taxonomy table in parent-child format as returned by
dbReadTaxonomy.
Value
A vector of mode "character" containing the ordered ranks.
See Also
ncbiTaxonomy for downloading the NCBI taxonomy and
dbReadTaxonomy for reading the project taxonomy; other
taxdump-related tools: taxdumpAddNode,
taxdumpChildren, taxdumpDropTip,
taxdumpMRCA, taxdumpSubset,
taxdump2phylo and taxdump_isTerminal.
heibl/megaptera documentation built on Jan. 17, 2021, 3:34 a.m.
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Description Usage Arguments Value See Also
View source: R/taxdumpRankOrder.R
Description
Return the order of ranks in a taxonomy from highest to lowest.
Usage
1 |
Arguments
x |
Either an object of class |
Value
A vector of mode "character" containing the ordered ranks.
See Also
ncbiTaxonomy for downloading the NCBI taxonomy and
dbReadTaxonomy for reading the project taxonomy; other
taxdump-related tools: taxdumpAddNode,
taxdumpChildren, taxdumpDropTip,
taxdumpMRCA, taxdumpSubset,
taxdump2phylo and taxdump_isTerminal.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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