## This code is part of the megaptera package
## © C. Heibl 2014 (last update 2017-10-18)
#' @importFrom ips mafft.merge
#' @export
alignSisterClades <- function(tp, seqs, megProj, thread = -1){
seqs <- seqs[as.character(tp)]
mafft.merge(seqs, exec = megProj@align.exe,
thread = thread)
}
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