PASTA (Mirarab, Nguyen, and Warnow 2014) is a highly accurate and scalable algorithm for multiple sequence alignment. GUIDANCE (Penn, Privman, Landan, Grauer, and Pupko 2010) is a well-performing method for the assessment of alignment uncertainty. Both methods are available as stand-alone programs, but, unfortunately, cannot be combined. This package provides a reimplementation of PASTA and GUIDANCE to combine their power to accurately align large numbers of sequences.
Package details |
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Author | Christoph Heibl [aut, cre], Franz-Sebastian Krah [aut] |
Maintainer | Christoph Heibl <christoph.heibl@npv-bw.bayern.de> |
License | file LICENSE |
Version | 0.0.0.9000 |
Package repository | View on GitHub |
Installation |
Install the latest version of this package by entering the following in R:
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