Description Usage Arguments Value See Also
Provides a complete reimplementation of the PASTA algorithm (Mirarab, Nguyen, and Warnow 2014) in R.
1 2 |
seqs |
An object of class |
gt |
Currently unused. |
k |
An integer giving the size of cluster in which the dataset is split. |
msa.program |
A character string giving the alignment program to use;
currently only |
method |
A character string choosing a method of the alignment program;
default is |
exec |
A character string giving the path to the alignment program executable. |
parallel |
Logical, indicating if the function should be run in parallel or serial mode. Currently unused! |
ncore |
An integer giving the number of cores to use in parallel mode. Currently unused! |
An object of class "polentaDNA"
.
extractMSA
for extractiong the multiple sequence
alignment of a "polentaDNA"
object.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.