Files in heibl/polenta
Multiple Sequence Alignment with PASTA and GUIDANCE

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/BPtree_from_MSA.R R/HoT.R R/HoT_in_GUIDANCE2.R R/RcppExports.R R/align_part_set.R R/centroidDecomposition.R R/clustalo.R R/clustalw2.R R/decomposePhyloRooted.R R/deleteGaps_dev.R R/dep/guidance-dep.R R/dep/guidance.R R/dep/protein_sequences.R R/dep/res_pair_score.R R/equalSubtrees.R R/extractMSA.R R/filterMSA.R R/guidance.R R/guidance2.R R/guidanceSA.R R/hello.R R/mafft_dev.R R/merge.R R/msaBP.R R/msa_set_scoreR.R R/msa_set_scoreSA.R R/muscle.R R/partitions.R R/pasta.R R/polenta-package.R R/polenta.R R/polentaAA-class.R R/polentaAA.R R/polentaDNA-class.R R/polentaDNA.R R/reappendScores.R R/residue_score_heatmap.R R/rev_DNA.R R/scores.R R/spanningTree.R R/transitivityMerge.R README.md dev/00.R dev/DEV-decomposePhylo.R dev/DEV-guidance.R dev/DEV-pasta.R dev/DEV-scores.R
dev/add_msa_par.cpp
dev/alignSubtree.R dev/cAAbin.R dev/compareMSAs.R
dev/data/AATF.fas
dev/data/base.msa_10.rda
dev/data/cortinarius_28s_ms.fas
dev/data/guide.msa_10.rda
dev/dep_Rcpp/add_msa.cpp
dev/dep_Rcpp/cmatrix.R
dev/dep_Rcpp/cmatrix_parallel.cpp
dev/dep_Rcpp/msa_recode.cpp
dev/dep_Rcpp/msa_set_scoreR_par.R
dev/dep_Rcpp/res_pair_hit.cpp
dev/dep_Rcpp/res_pair_hit_3d.cpp
dev/dep_Rcpp/res_pair_score.cpp
dev/dep_Rcpp/res_score.cpp
dev/dep_Rcpp/score_calculation_dep.cpp
dev/dep_Rcpp/score_parallel.cpp
dev/dep_Rcpp/score_parallel_alt2.cpp
dev/dep_Rcpp/scores.R
dev/dep_Rcpp/subsequent_score_calc.cpp
dev/devworkspace.rda
dev/gapbase_bin.R dev/guidance_dev.R dev/power.R dev/res_pair_score.R
dev/scores.rda
dev/semphy-DEV.R
dev/src/.gitignore
dev/test.fas
dev/test.pdf
doc/large_benchmark_sources
inst/extdata/BB30015.fasta
inst/extdata/BB50009.fasta
man/HoT.Rd man/align_part_set.Rd man/centroidDecomposition.Rd man/confidence.heatmap.Rd man/decomposePhyloRooted.Rd man/deleteGaps.Rd man/equalSubtrees.Rd man/extractMSA.Rd man/filterMSA.Rd man/guidance.Rd man/guidance2.Rd man/guidanceSA.Rd man/mafft.Rd man/msaBP.Rd man/msaBP_nj_tree.Rd man/msa_set_scoreR.Rd man/msa_set_scoreSA.Rd man/partitions.Rd man/pasta.Rd man/polenta.Rd man/reappendScores.Rd man/rev_DNA.Rd man/scores.Rd man/spanningTree.Rd man/transitivityMerge.Rd
polenta.Rproj
src/RcppExports.cpp
src/score_calculation.cpp
heibl/polenta documentation built on Oct. 13, 2017, 9:39 p.m.