transitivityMerge: Transitivity Merge
In heibl/polenta: Multiple Sequence Alignment with PASTA and GUIDANCE
Description
Usage
Arguments
Value
View source: R/transitivityMerge.R
Description
Merges two multiple sequence alignments and their reliability
scores using the transitivity criterion.
Usage
1
transitivityMerge(x, id = c(1, 2), exec)
Arguments
x
A list containing objects of class "polentaDNA".
id
An integer vector of length 2 indicating the two elements of
x that will be merged.
exec
A character string giving the path to the alignment program
executable. This alignment program is only used to merge leading and
trailing positions in the two MSAa that have no shared sequences. All other
positions are merged by transitivity.
Value
An object of class "polentaDNA".
heibl/polenta documentation built on May 17, 2019, 3:22 p.m.
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Description Usage Arguments Value
View source: R/transitivityMerge.R
Description
Merges two multiple sequence alignments and their reliability scores using the transitivity criterion.
Usage
1 | transitivityMerge(x, id = c(1, 2), exec)
|
Arguments
x |
A list containing objects of class |
id |
An integer vector of length 2 indicating the two elements of
|
exec |
A character string giving the path to the alignment program executable. This alignment program is only used to merge leading and trailing positions in the two MSAa that have no shared sequences. All other positions are merged by transitivity. |
Value
An object of class "polentaDNA".
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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