print_optimalDesign_10X: Print design parameters of optimal design

In heiniglab/scPower: Experimental design framework for scRNAseq population studies (eQTL and DE)

Print design parameters of optimal design

Description

Convenience function to read the output of the budget optimization functions more easily: selected the row with the optimal detection power and showing sample size, cells and read depth as well as the number of 10X kits and flow cells for this specific design

Usage

print_optimalDesign_10X(
  optim_output,
  samplesPerLane,
  readsPerFlowcell,
  reactionsPerKit = 6
)

Arguments

optim_output	Result data frame of the optimization functions (optimize.constant.budget and variants of the function)
samplesPerLane	Number of individuals sequenced per lane
readsPerFlowcell	Number reads that can be sequenced with one flow cell
reactionsPerKit	Reactions (=lanes) per kit, defines the total number of tested individuals per kit

Value

Nothing (print output instead)

heiniglab/scPower documentation built on Jan. 9, 2025, 12:13 p.m.