readDepthBudgetCalculation: Estimate possible read depth depending on the total cost and...
In heiniglab/scPower: Experimental design framework for scRNAseq population studies (eQTL and DE)
readDepthBudgetCalculation R Documentation
Estimate possible read depth depending on the total cost
and the other parameters for 10X design
Description
Estimate possible read depth depending on the total cost
and the other parameters for 10X design
Usage
readDepthBudgetCalculation(
nSamples,
nCells,
totalCost,
costKit,
samplesPerLane,
costFlowCell,
readsPerFlowcell,
reactionsPerKit = 6
)
Arguments
nSamples
Number of samples
nCells
Cells per individual
totalCost
Experimental budget
costKit
Cost for one 10X kit
samplesPerLane
Number of individuals sequenced per lane
costFlowCell
Cost of one flow cells for sequencing
readsPerFlowcell
Number reads that can be sequenced with one flow cell
reactionsPerKit
Reactions (=lanes) per kit, defines the total
number of tested individuals per kit
Value
Read depth that can be measured with this budget and other parameters
heiniglab/scPower documentation built on Jan. 9, 2025, 12:13 p.m.
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| readDepthBudgetCalculation | R Documentation |
Estimate possible read depth depending on the total cost and the other parameters for 10X design
Description
Estimate possible read depth depending on the total cost and the other parameters for 10X design
Usage
readDepthBudgetCalculation(
nSamples,
nCells,
totalCost,
costKit,
samplesPerLane,
costFlowCell,
readsPerFlowcell,
reactionsPerKit = 6
)
Arguments
nSamples |
Number of samples |
nCells |
Cells per individual |
totalCost |
Experimental budget |
costKit |
Cost for one 10X kit |
samplesPerLane |
Number of individuals sequenced per lane |
costFlowCell |
Cost of one flow cells for sequencing |
readsPerFlowcell |
Number reads that can be sequenced with one flow cell |
reactionsPerKit |
Reactions (=lanes) per kit, defines the total number of tested individuals per kit |
Value
Read depth that can be measured with this budget and other parameters
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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