readDepthBudgetCalculation.libPrepCell: Estimate possible read depth depending on the total cost,...

In heiniglab/scPower: Experimental design framework for scRNAseq population studies (eQTL and DE)

Estimate possible read depth depending on the total cost, using library preparation costs per cell

Description

Estimate possible read depth depending on the total cost, using library preparation costs per cell

Usage

readDepthBudgetCalculation.libPrepCell(
  nSamples,
  nCells,
  totalCost,
  prepCostCell,
  costFlowCell,
  readsPerFlowcell
)

Arguments

nSamples	Number of samples
nCells	Cells per individual
totalCost	Experimental budget
prepCostCell	Library preparation costs per cell
costFlowCell	Cost of one flow cells for sequencing
readsPerFlowcell	Number reads that can be sequenced with one flow cell

Value

Read depth that can be measured with this budget and other parameters

heiniglab/scPower documentation built on Jan. 9, 2025, 12:13 p.m.